if you hooked it up with no motors on the drivers then most likely you burnt up your drivers. Never power on the cnc shield (12v power supply) without motors plugged in. if you only plugged in the usb then you should be fine. I was looking at the pdf for the electronics since i didn't recall any "3 wire plugs" and I believe the ones you are referring to are the end stop plugs that are plugged in to the far right. The stepper drivers are plugged in near the drivers. If your motors turn the opposite way the fix is also easy just flip the plug, this will turn the motor the opposite way.